PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_28828.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 148aa    MW: 16935.4 Da    PI: 9.5018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_28828.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-20554255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a+ k++g
  Rsa1.0_28828.1_g00001.1  5 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAESAALAYDEAAFKFKG 54
                             7********.**********93....36************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-33463IPR001471AP2/ERF domain
PfamPF008473.0E-14554IPR001471AP2/ERF domain
SMARTSM003804.6E-37568IPR001471AP2/ERF domain
CDDcd000183.21E-30563No hitNo description
SuperFamilySSF541711.5E-22563IPR016177DNA-binding domain
PROSITE profilePS5103224.684562IPR001471AP2/ERF domain
PRINTSPR003676.0E-12617IPR001471AP2/ERF domain
PRINTSPR003676.0E-122844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MRRRHYRGVR QRPWGKWAAE IRDPQKAARV WLGTFETAES AALAYDEAAF KFKGNKAKLN  60
FPERVNVINN DQLSNSAYYS SNQIESHNIP YYNRYYQDGS NNDMLSFSLT TSTTTAGTTS  120
SSSVGSSRPQ EEQDYDRFWR FGDSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-30466467ATERF1
3gcc_A6e-30466467ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0222121e-65AB022212.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K22G18.
GenBankAY5608621e-65AY560862.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g61890) mRNA, complete cds.
GenBankBT0313571e-65BT031357.1 Arabidopsis thaliana unknown protein (At5g61890) mRNA, complete cds.
GenBankCP0026881e-65CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013718191.11e-74PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH544e-64EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A078IT241e-74A0A078IT24_BRANA; BnaCnng24520D protein
STRINGBra029302.1-P2e-68(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.17e-50ERF family protein